HL_5ND9_100

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUUA

Length

5 nucleotides

Bulged bases

5ND9|1|a|U|1464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_100 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2277

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

5ND9|1|a|U|1461
5ND9|1|a|U|1462
5ND9|1|a|U|1463
5ND9|1|a|U|1464
5ND9|1|a|A|1465

Current chains

Chain a

16S ribosomal RNA

Nearby chains