HL_5NDG_001
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 5NDG|1|1|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_001 not in the Motif Atlas
- Homologous match to HL_5TBW_001
- Geometric discrepancy: 0.107
- The information below is about HL_5TBW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5NDG|1|1|U|38
5NDG|1|1|A|39
5NDG|1|1|A|40
5NDG|1|1|G|41
5NDG|1|1|C|42
5NDG|1|1|A|43
5NDG|1|1|U|44
5NDG|1|1|A|45
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N8
- 60S ribosomal protein L28
- Chain Q2
- 60S ribosomal protein L42-A
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