HL_5NDG_014
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 5NDG|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_014 not in the Motif Atlas
- Homologous match to HL_5TBW_014
- Geometric discrepancy: 0.0993
- The information below is about HL_5TBW_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5NDG|1|1|U|640
5NDG|1|1|C|641
5NDG|1|1|U|642
5NDG|1|1|U|643
5NDG|1|1|G|644
5NDG|1|1|A|645
5NDG|1|1|A|646
5NDG|1|1|A|647
5NDG|1|1|C|648
5NDG|1|1|A|649
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain N8
- 60S ribosomal protein L28
- Chain O2
- 60S ribosomal protein L32
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