HL_5NDG_058
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 5NDG|1|1|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_058 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.0875
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5NDG|1|1|C|2776
5NDG|1|1|G|2777
5NDG|1|1|G|2778
5NDG|1|1|A|2779
5NDG|1|1|A|2780
5NDG|1|1|U|2781
5NDG|1|1|U|2782
5NDG|1|1|U|2783
5NDG|1|1|G|2784
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M3
- 60S ribosomal protein L13-A
- Chain N8
- 60S ribosomal protein L28
- Chain O6
- 60S ribosomal protein L36-A
- Chain Q2
- 60S ribosomal protein L42-A
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