HL_5NDG_100

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_100 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1347

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5NDG|1|2|C|1501
5NDG|1|2|G|1502
5NDG|1|2|A|1503
5NDG|1|2|G|1504
5NDG|1|2|A|1505
5NDG|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C5

40S ribosomal protein S15

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A