HL_5NDG_121

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5NDG|1|5|U|545, 5NDG|1|5|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_121 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.5942

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5NDG|1|5|C|543
5NDG|1|5|C|544
5NDG|1|5|U|545
5NDG|1|5|C|546
5NDG|1|5|G|547
5NDG|1|5|G|548

Current chains

Chain 5

25S ribosomal RNA

Nearby chains