HL_5NDG_146

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

5NDG|1|5|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_146 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.0832

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NDG|1|5|G|1680
5NDG|1|5|U|1681
5NDG|1|5|U|1682
5NDG|1|5|A|1683
5NDG|1|5|U|1684
5NDG|1|5|C|1685
5NDG|1|5|U|1686
5NDG|1|5|U|1687
5NDG|1|5|U|1688

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n2

60S ribosomal protein L22-A