HL_5NDG_158
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5NDG|1|5|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_158 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.0875
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDG|1|5|G|2253
5NDG|1|5|U|2254
5NDG|1|5|A|2255
5NDG|1|5|A|2256
5NDG|1|5|C|2257
5NDG|1|5|U|2258
5NDG|1|5|A|2259
5NDG|1|5|U|2260
5NDG|1|5|G|2261
5NDG|1|5|A|2262
5NDG|1|5|C|2263
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain e0
- 40S ribosomal protein S30-A
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