HL_5NDG_177
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5NDG|1|5|G|3116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_177 not in the Motif Atlas
- Homologous match to HL_5TBW_067
- Geometric discrepancy: 0.1131
- The information below is about HL_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
5NDG|1|5|C|3110
5NDG|1|5|U|3111
5NDG|1|5|G|3112
5NDG|1|5|A|3113
5NDG|1|5|A|3114
5NDG|1|5|C|3115
5NDG|1|5|G|3116
5NDG|1|5|C|3117
5NDG|1|5|C|3118
5NDG|1|5|U|3119
5NDG|1|5|C|3120
5NDG|1|5|U|3121
5NDG|1|5|A|3122
5NDG|1|5|A|3123
5NDG|1|5|G|3124
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l9
- 60S ribosomal protein L9-A
- Chain m6
- 60S ribosomal protein L16-A
- Chain n0
- 60S ribosomal protein L20-A
- Chain q0
- Ubiquitin-60S ribosomal protein L40
Coloring options: