HL_5NDG_179

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

5NDG|1|5|A|3243, 5NDG|1|5|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_179 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2226

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5NDG|1|5|C|3240
5NDG|1|5|G|3241
5NDG|1|5|G|3242
5NDG|1|5|A|3243
5NDG|1|5|A|3244
5NDG|1|5|A|3245
5NDG|1|5|G|3246
5NDG|1|5|G|3247

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain m6

60S ribosomal protein L16-A