3D structure

PDB id
5NDG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
CAGAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5NDG_217 not in the Motif Atlas
Geometric match to HL_5TBW_022
Geometric discrepancy: 0.3732
The information below is about HL_5TBW_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

5NDG|1|6|C|1686
5NDG|1|6|A|1712
5NDG|1|6|G|1713
5NDG|1|6|A|1714
5NDG|1|6|G|1715

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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