HL_5NDG_221
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5NDG|1|8|U|81, 5NDG|1|8|C|84, 5NDG|1|8|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_221 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.4189
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5NDG|1|8|U|69
5NDG|1|8|G|70
5NDG|1|8|A|71
5NDG|1|8|A|72
5NDG|1|8|U|73
5NDG|1|8|U|74
5NDG|1|8|G|75
5NDG|1|8|C|76
5NDG|1|8|A|77
5NDG|1|8|G|78
5NDG|1|8|A|79
5NDG|1|8|A|80
5NDG|1|8|U|81
5NDG|1|8|U|82
5NDG|1|8|C|83
5NDG|1|8|C|84
5NDG|1|8|G|85
5NDG|1|8|U|86
5NDG|1|8|G|87
5NDG|1|8|A|88
5NDG|1|8|A|89
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain O5
- 60S ribosomal protein L35-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o9
- 60S ribosomal protein L39
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