HL_5NDI_002
3D structure
- PDB id
- 5NDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the E.coli guanidine II riboswitch P1 stem-loop
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.57 Å
Loop
- Sequence
- GACGAC
- Length
- 6 nucleotides
- Bulged bases
- 5NDI|1|B|A|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5NDI|1|B|G|8
5NDI|1|B|A|9
5NDI|1|B|C|10
5NDI|1|B|G|11
5NDI|1|B|A|12
5NDI|1|B|C|13
Current chains
- Chain B
- RNA (5'-R(*UP*UP*UP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*CP*UP*GP*(CBV)P*AP*AP*A)-3')
Nearby chains
- Chain A
- RNA (5'-R(*UP*UP*UP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*CP*UP*GP*(CBV)P*AP*AP*A)-3')
Coloring options: