HL_5NDJ_029
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5NDJ|1|13|U|1992
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_029 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0952
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|13|G|1983
5NDJ|1|13|A|1984
5NDJ|1|13|U|1985
5NDJ|1|13|C|1986
5NDJ|1|13|A|1987
5NDJ|1|13|G|1988
5NDJ|1|13|C|1989
5NDJ|1|13|C|1990
5NDJ|1|13|A|1991
5NDJ|1|13|U|1992
5NDJ|1|13|G|1993
5NDJ|1|13|C|1994
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1F
- 30S ribosomal protein Thx
- Chain 1I
- 30S ribosomal protein S10
- Chain 2E
- 30S ribosomal protein S3
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
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