HL_5NDJ_073

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

5NDJ|1|14|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_073 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.0835

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

5NDJ|1|14|C|1680
5NDJ|1|14|A|1681
5NDJ|1|14|A|1682
5NDJ|1|14|G|1683
5NDJ|1|14|A|1684
5NDJ|1|14|G|1685

Current chains

Chain 14

23S ribosomal RNA

Nearby chains