HL_5NDJ_103

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_103 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.0779

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5NDJ|1|1G|U|658
5NDJ|1|1G|U|659
5NDJ|1|1G|U|660
5NDJ|1|1G|G|661
5NDJ|1|1G|A|662
5NDJ|1|1G|U|663
5NDJ|1|1G|C|664
5NDJ|1|1G|C|665
5NDJ|1|1G|U|666
5NDJ|1|1G|G|667
5NDJ|1|1G|G|668

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 42

30S ribosomal protein S5