HL_5NDJ_123
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 5NDJ|1|1G|G|1594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_123 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0774
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|1G|G|1586
5NDJ|1|1G|A|1587
5NDJ|1|1G|A|1588
5NDJ|1|1G|G|1589
5NDJ|1|1G|C|1590
5NDJ|1|1G|A|1591
5NDJ|1|1G|A|1592
5NDJ|1|1G|C|1593
5NDJ|1|1G|G|1594
5NDJ|1|1G|C|1595
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 82
- 30S ribosomal protein S9
- Chain W4
- Transfer RNA; tRNA
- Chain X4
- Transfer RNA; tRNA
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