HL_5NDJ_127

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5NDJ|1|1G|G|1722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_127 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1531

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NDJ|1|1G|G|1717
5NDJ|1|1G|U|1718
5NDJ|1|1G|U|1719
5NDJ|1|1G|A|1720
5NDJ|1|1G|A|1721
5NDJ|1|1G|G|1722
5NDJ|1|1G|U|1723
5NDJ|1|1G|C|1724

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 62

30S ribosomal protein S7