HL_5NDJ_135
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_135 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.0744
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NDJ|1|1H|U|58
5NDJ|1|1H|G|59
5NDJ|1|1H|G|60
5NDJ|1|1H|C|61
5NDJ|1|1H|U|62
5NDJ|1|1H|A|63
5NDJ|1|1H|C|64
5NDJ|1|1H|C|65
5NDJ|1|1H|U|66
5NDJ|1|1H|G|67
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain F8
- 50S ribosomal protein L23
- Chain K8
- 50S ribosomal protein L29
- Chain P8
- 50S ribosomal protein L34
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