HL_5NDJ_149
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGUGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_149 not in the Motif Atlas
- Homologous match to HL_5J7L_147
- Geometric discrepancy: 0.0553
- The information below is about HL_5J7L_147
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
5NDJ|1|1H|C|490
5NDJ|1|1H|G|491
5NDJ|1|1H|U|492
5NDJ|1|1H|G|493
5NDJ|1|1H|A|494
5NDJ|1|1H|G|495
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain P8
- 50S ribosomal protein L34
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