HL_5NDJ_183
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 5NDJ|1|1H|A|1938
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_183 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1443
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|1H|G|1935
5NDJ|1|1H|U|1936
5NDJ|1|1H|A|1937
5NDJ|1|1H|A|1938
5NDJ|1|1H|C|1939
5NDJ|1|1H|U|1940
5NDJ|1|1H|A|1941
5NDJ|1|1H|U|1942
5NDJ|1|1H|A|1943
5NDJ|1|1H|A|1944
5NDJ|1|1H|C|1945
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain W1
- Transfer RNA; tRNA
- Chain X1
- Transfer RNA; tRNA
- Chain Y1
- mRNA
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