HL_5NDJ_190
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGACGGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_190 not in the Motif Atlas
- Homologous match to HL_5J7L_188
- Geometric discrepancy: 0.2742
- The information below is about HL_5J7L_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5NDJ|1|1H|G|2318
5NDJ|1|1H|G|2319
5NDJ|1|1H|A|2320
5NDJ|1|1H|C|2321
5NDJ|1|1H|G|2322
5NDJ|1|1H|G|2323
5NDJ|1|1H|A|2324
5NDJ|1|1H|A|2325
5NDJ|1|1H|A|2326
5NDJ|1|1H|U|2327
5NDJ|1|1H|C|2328
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 41
- 50S ribosomal protein L5
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