HL_5NDK_001
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 5NDK|1|13|U|660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0626
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDK|1|13|U|658
5NDK|1|13|U|659
5NDK|1|13|U|660
5NDK|1|13|G|661
5NDK|1|13|A|662
5NDK|1|13|U|663
5NDK|1|13|C|664
5NDK|1|13|C|665
5NDK|1|13|U|666
5NDK|1|13|G|667
5NDK|1|13|G|668
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3I
- 30S ribosomal protein S12
- Chain 4E
- 30S ribosomal protein S5
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