5NDK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NDK_001 | 1/13/658:668 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5NDK_238 | 1/13/796:805 | No text annotation | ||
| HL_5NDK_004 | 1/13/832:837 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_5NDK_239 | 1/13/853:857 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_5NDK_006 | 1/13/900:908 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_5NDK_007 | 1/13/937:942 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_5NDK_008 | 1/13/961:974 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_5NDK_009 | 1/13/983:988 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5NDK_010 | 1/13/1020:1025 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_5NDK_011 | 1/13/1060:1065 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_5NDK_012 | 1/13/1098:1104 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_5NDK_013 | 1/13/1151:1156 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_5NDK_014 | 1/13/1246:1252 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_5NDK_015 | 1/13/1318:1327 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_5NDK_016 | 1/13/1355:1360 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_5NDK_017 | 1/13/1415:1425 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_5NDK_018 | 1/13/1467:1471 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_5NDK_019 | 1/13/1485:1490 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_5NDK_020 | 1/13/1520:1525 | GNRA | homologous HL_5J7L_020 NA | |
| HL_5NDK_225 | 1/13/1586:1595 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_5NDK_022 | 1/13/1636:1641 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5NDK_023 | 1/13/1704:1709 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_5NDK_024 | 1/13/1717:1724 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_5NDK_025 | 1/13/1762:1768 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_5NDK_026 | 1/13/1793:1798 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_5NDK_027 | 1/13/1892:1897 | GNRA | homologous HL_5J7L_027 NA | |
| HL_5NDK_028 | 1/13/1941:1950 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_5NDK_029 | 1/13/1983:1994 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5NDK_030 | 1/13/2075:2080 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5NDK_031 | 1/13/2138:2143 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_5NDK_032 | 1/14/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5NDK_033 | 1/14/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5NDK_034 | 1/14/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_5NDK_035 | 1/14/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5NDK_037 | 1/14/184:191 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_5NDK_038 | 1/14/215:220 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_5NDK_039 | 1/14/236:242 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_5NDK_040 | 1/14/271:274 | No text annotation | ||
| HL_5NDK_041 | 1/14/330:337 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5NDK_042 | 1/14/344:348 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5NDK_043 | 1/14/352:360 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5NDK_226 | 1/14/411:419 | No text annotation | ||
| HL_5NDK_045 | 1/14/438:445 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5NDK_046 | 1/14/490:495 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5NDK_047 | 1/14/515:520 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_5NDK_048 | 1/14/570:575 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_5NDK_049 | 1/14/591:600 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_5NDK_050 | 1/14/637:643 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_5NDK_051 | 1/14/656:661 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5NDK_052 | 1/14/668:674 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5NDK_053 | 1/14/761:768 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5NDK_054 | 1/14/793:802 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5NDK_055 | 1/14/828:834 | UNCG variation | homologous HL_7A0S_023 HL_51020.1 | |
| HL_5NDK_056 | 1/14/875:880 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5NDK_057 | 1/14/931:942 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_5NDK_058 | 1/14/1002:1009 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5NDK_059 | 1/14/1026:1033 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5NDK_240 | 1/14/1103:1152 | No text annotation | ||
| HL_5NDK_060 | 1/14/1107:1127 | No text annotation | ||
| HL_5NDK_061 | 1/14/1139:1148 | No text annotation | ||
| HL_5NDK_241 | 1/14/1218:1228 | No text annotation | ||
| HL_5NDK_062 | 1/14/1220:1226 | No text annotation | ||
| HL_5NDK_063 | 1/14/1271:1276 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5NDK_064 | 1/14/1330:1338 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5NDK_065 | 1/14/1373:1379 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_5NDK_066 | 1/14/1412:1417 | GNRA | homologous HL_7RQB_035 NA | |
| HL_5NDK_067 | 1/14/1438:1447 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5NDK_068 | 1/14/1502:1509 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_5NDK_069 | 1/14/1541:1547 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5NDK_070 | 1/14/1582:1587 | No text annotation | ||
| HL_5NDK_071 | 1/14/1615:1618 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_5NDK_072 | 1/14/1661:1668 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5NDK_073 | 1/14/1680:1685 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5NDK_074 | 1/14/1741:1746 | UNCG | geometric HL_4LFB_011 HL_61337.1 | |
| HL_5NDK_075 | 1/14/1768:1774 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_5NDK_076 | 1/14/1786:1790 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5NDK_077 | 1/14/1811:1821 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_5NDK_078 | 1/14/1840:1845 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5NDK_079 | 1/14/1898:1903 | GNRA | homologous HL_7RQB_047 NA | |
| HL_5NDK_080 | 1/14/1935:1945 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5NDK_081 | 1/14/1974:1982 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_5NDK_082 | 1/14/2052:2061 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5NDK_083 | 1/14/2168:2173 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_5NDK_084 | 1/14/2229:2234 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_5NDK_085 | 1/14/2263:2271 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5NDK_086 | 1/14/2279:2291 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5NDK_087 | 1/14/2318:2328 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_5NDK_088 | 1/14/2339:2346 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5NDK_089 | 1/14/2370:2377 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5NDK_090 | 1/14/2389:2394 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5NDK_091 | 1/14/2419:2428 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5NDK_092 | 1/14/2486:2494 | No text annotation | geometric HL_361D_002 NA | |
| HL_5NDK_093 | 1/14/2543:2550 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5NDK_094 | 1/14/2566:2572 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5NDK_095 | 1/14/2609:2614 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5NDK_096 | 1/14/2673:2678 | GNRA | geometric HL_5J7L_197 NA | |
| HL_5NDK_097 | 1/14/2716:2721 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5NDK_098 | 1/14/2761:2775 | No text annotation | homologous HL_7A0S_065 HL_53269.1 | |
| HL_5NDK_099 | 1/14/2832:2840 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5NDK_100 | 1/14/2869:2874 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5NDK_229 | 1/16/36:50 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_5NDK_101 | 1/16/40:46 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5NDK_102 | 1/16/88:93 | GNRA | homologous HL_4V9F_072 HL_34789.1 | |
| HL_5NDK_103 | 1/1G/658:668 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5NDK_105 | 1/1G/798:803 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_5NDK_106 | 1/1G/832:837 | No text annotation | homologous HL_4LFB_004 HL_89167.1 | |
| HL_5NDK_107 | 1/1G/853:857 | Mini UNCG | homologous HL_4LFB_005 HL_90436.1 | |
| HL_5NDK_108 | 1/1G/900:908 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_5NDK_109 | 1/1G/937:942 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_5NDK_110 | 1/1G/961:974 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_5NDK_111 | 1/1G/983:988 | UNCG | homologous HL_5J7L_009 NA | |
| HL_5NDK_112 | 1/1G/1020:1025 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_5NDK_113 | 1/1G/1060:1065 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_5NDK_231 | 1/1G/1098:1104 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_5NDK_115 | 1/1G/1151:1156 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_5NDK_116 | 1/1G/1246:1252 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_5NDK_117 | 1/1G/1318:1327 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_5NDK_118 | 1/1G/1355:1360 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_5NDK_119 | 1/1G/1415:1425 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_5NDK_242 | 1/1G/1467:1471 | Mini UNCG | homologous HL_4LFB_018 HL_90436.1 | |
| HL_5NDK_121 | 1/1G/1485:1490 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_5NDK_122 | 1/1G/1520:1525 | GNRA | homologous HL_5J7L_020 NA | |
| HL_5NDK_123 | 1/1G/1586:1595 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_5NDK_124 | 1/1G/1636:1641 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5NDK_126 | 1/1G/1704:1709 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_5NDK_127 | 1/1G/1717:1724 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_5NDK_244 | 1/1G/1762:1768 | No text annotation | homologous HL_4LFB_026 HL_92935.1 | |
| HL_5NDK_129 | 1/1G/1793:1798 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_5NDK_130 | 1/1G/1892:1897 | GNRA | homologous HL_5J7L_027 NA | |
| HL_5NDK_131 | 1/1G/1941:1950 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_5NDK_132 | 1/1G/1983:1994 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5NDK_133 | 1/1G/2075:2080 | Mini UNCG | geometric HL_5T16_002 HL_12626.1 | |
| HL_5NDK_134 | 1/1G/2138:2143 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_5NDK_135 | 1/1H/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5NDK_136 | 1/1H/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5NDK_137 | 1/1H/121:126 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_5NDK_138 | 1/1H/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5NDK_139 | 1/1H/155:161 | No text annotation | geometric HL_2ZNI_001 HL_75660.6 | |
| HL_5NDK_140 | 1/1H/184:191 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_5NDK_141 | 1/1H/215:220 | No text annotation | homologous HL_7A0S_007 HL_51020.1 | |
| HL_5NDK_142 | 1/1H/236:242 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_5NDK_143 | 1/1H/270:276 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_5NDK_144 | 1/1H/330:337 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5NDK_145 | 1/1H/344:348 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5NDK_146 | 1/1H/352:360 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5NDK_234 | 1/1H/411:419 | No text annotation | ||
| HL_5NDK_148 | 1/1H/438:445 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5NDK_149 | 1/1H/490:495 | GNRA | homologous HL_5J7L_147 NA | |
| HL_5NDK_150 | 1/1H/515:520 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5NDK_151 | 1/1H/570:575 | GNRA | geometric HL_3IGI_006 HL_34789.1 | |
| HL_5NDK_152 | 1/1H/591:600 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_5NDK_153 | 1/1H/637:643 | No text annotation | homologous HL_7A0S_019 HL_13184.1 | |
| HL_5NDK_154 | 1/1H/656:661 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5NDK_155 | 1/1H/668:674 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5NDK_156 | 1/1H/684:699 | No text annotation | geometric HL_4V88_198 NA | |
| HL_5NDK_157 | 1/1H/761:768 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5NDK_158 | 1/1H/793:802 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5NDK_159 | 1/1H/828:834 | UNCG variation | homologous HL_7A0S_023 HL_51020.1 | |
| HL_5NDK_160 | 1/1H/875:880 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5NDK_235 | 1/1H/929:945 | No text annotation | ||
| HL_5NDK_161 | 1/1H/932:941 | No text annotation | ||
| HL_5NDK_162 | 1/1H/1002:1009 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5NDK_163 | 1/1H/1026:1033 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5NDK_164 | 1/1H/1103:1152 | No text annotation | ||
| HL_5NDK_165 | 1/1H/1219:1227 | No text annotation | ||
| HL_5NDK_166 | 1/1H/1271:1276 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5NDK_167 | 1/1H/1330:1338 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5NDK_168 | 1/1H/1373:1379 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_5NDK_169 | 1/1H/1412:1417 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5NDK_170 | 1/1H/1438:1447 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5NDK_171 | 1/1H/1502:1509 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_5NDK_172 | 1/1H/1541:1547 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5NDK_173 | 1/1H/1582:1587 | No text annotation | ||
| HL_5NDK_174 | 1/1H/1615:1618 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_5NDK_175 | 1/1H/1661:1668 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5NDK_176 | 1/1H/1680:1685 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5NDK_177 | 1/1H/1741:1746 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_5NDK_178 | 1/1H/1768:1774 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_5NDK_179 | 1/1H/1786:1790 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5NDK_180 | 1/1H/1811:1821 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_5NDK_181 | 1/1H/1840:1845 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5NDK_182 | 1/1H/1898:1903 | GNRA | homologous HL_7RQB_047 NA | |
| HL_5NDK_183 | 1/1H/1935:1945 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5NDK_184 | 1/1H/1974:1982 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_5NDK_185 | 1/1H/2052:2061 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5NDK_186 | 1/1H/2168:2173 | UNCG | homologous HL_3U4M_001 HL_61337.1 | |
| HL_5NDK_187 | 1/1H/2229:2234 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_5NDK_188 | 1/1H/2263:2271 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5NDK_189 | 1/1H/2279:2291 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5NDK_245 | 1/1H/2319:2327 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_5NDK_191 | 1/1H/2339:2346 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5NDK_192 | 1/1H/2370:2377 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5NDK_193 | 1/1H/2389:2394 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5NDK_194 | 1/1H/2419:2428 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5NDK_195 | 1/1H/2486:2494 | No text annotation | geometric HL_361D_002 NA | |
| HL_5NDK_196 | 1/1H/2543:2550 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5NDK_197 | 1/1H/2566:2572 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5NDK_198 | 1/1H/2609:2614 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5NDK_199 | 1/1H/2673:2678 | GNRA | homologous HL_5J7L_197 NA | |
| HL_5NDK_200 | 1/1H/2716:2721 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5NDK_201 | 1/1H/2761:2775 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5NDK_202 | 1/1H/2832:2840 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5NDK_203 | 1/1H/2869:2874 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5NDK_236 | 1/1J/36:50 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_5NDK_204 | 1/1J/40:46 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5NDK_205 | 1/1J/88:93 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_5NDK_206 | 1/V1/13:22 | tRNA D-loop | homologous HL_6JXM_001 NA | |
| HL_5NDK_207 | 1/V1/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 NA | |
| HL_5NDK_208 | 1/V1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5B63_004 HL_33597.1 | |
| HL_5NDK_209 | 1/V4/13:22 | No text annotation | homologous HL_5EL4_221 NA | |
| HL_5NDK_237 | 1/V4/31:39 | tRNA anticodon loop | homologous HL_6UGG_005 HL_11974.1 | |
| HL_5NDK_211 | 1/V4/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5B63_004 HL_33597.1 | |
| HL_5NDK_212 | 1/W1/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_5NDK_213 | 1/W1/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 NA | |
| HL_5NDK_214 | 1/W1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3ZGZ_003 HL_33597.1 | |
| HL_5NDK_215 | 1/W4/13:22 | tRNA D-loop | homologous HL_6JXM_001 NA | |
| HL_5NDK_216 | 1/W4/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 NA | |
| HL_5NDK_217 | 1/W4/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YCO_003 HL_33597.1 | |
| HL_5NDK_218 | 1/X1/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_5NDK_219 | 1/X1/31:39 | tRNA anticodon loop | homologous HL_4V90_033 NA | |
| HL_5NDK_220 | 1/X1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_33597.1 | |
| HL_5NDK_221 | 1/X4/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_5NDK_222 | 1/X4/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_5NDK_223 | 1/X4/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6JXM_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NDK_002 | No text annotation | ||
| HL_5NDK_003 | No text annotation | ||
| HL_5NDK_224 | No text annotation | ||
| HL_5NDK_005 | No text annotation | ||
| HL_5NDK_021 | No text annotation | ||
| HL_5NDK_036 | No text annotation | ||
| HL_5NDK_044 | No text annotation | ||
| HL_5NDK_227 | No text annotation | ||
| HL_5NDK_228 | No text annotation | ||
| HL_5NDK_104 | No text annotation | ||
| HL_5NDK_230 | No text annotation | ||
| HL_5NDK_114 | No text annotation | ||
| HL_5NDK_120 | No text annotation | ||
| HL_5NDK_125 | No text annotation | ||
| HL_5NDK_243 | No text annotation | ||
| HL_5NDK_128 | No text annotation | ||
| HL_5NDK_232 | No text annotation | ||
| HL_5NDK_233 | tRNA anticodon loop | ||
| HL_5NDK_147 | No text annotation | ||
| HL_5NDK_190 | No text annotation | ||
| HL_5NDK_210 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NDK_001 | 1/13/676:678, 1/13/1181:1182 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_5NDK_002 | 1/13/690:691, 1/13/1037:1039 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_5NDK_003 | 1/13/693:698, 1/13/1000:1002 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_5NDK_004 | 1/13/700:702, 1/13/997:998 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_5NDK_005 | 1/13/709:712, 1/13/742:743 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_5NDK_006 | 1/13/713:715, 1/13/739:741 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_5NDK_007 | 1/13/768:771, 1/13/872:873 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5NDK_008 | 1/13/772:776, 1/13/868:871 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_5NDK_344 | 1/13/788:793, 1/13/808:814 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_5NDK_010 | 1/13/826:828, 1/13/841:843 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_5NDK_011 | 1/13/883:888, 1/13/918:925 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5NDK_012 | 1/13/890:893, 1/13/915:916 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_5NDK_013 | 1/13/933:934, 1/13/945:949 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5NDK_014 | 1/13/1008:1010, 1/13/1033:1034 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_5NDK_015 | 1/13/1012:1016, 1/13/1030:1031 | C-loop | geometric IL_5J7L_018 NA | |
| IL_5NDK_016 | 1/13/1016:1017, 1/13/1028:1030 | Single bulged G | homologous IL_4LFB_016 IL_28408.1 | |
| IL_5NDK_017 | 1/13/1050:1057, 1/13/1068:1074 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_5NDK_018 | 1/13/1086:1090, 1/13/1113:1118 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_5NDK_019 | 1/13/1090:1095, 1/13/1107:1113 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_5NDK_020 | 1/13/1133:1140, 1/13/1169:1170 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_5NDK_021 | 1/13/1144:1150, 1/13/1157:1165 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5NDK_022 | 1/13/1198:1204, 1/13/1503:1504 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_5NDK_023 | 1/13/1209:1213, 1/13/1386:1390 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_5NDK_024 | 1/13/1223:1225, 1/13/1273:1274 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_5NDK_025 | 1/13/1226:1227, 1/13/1269:1272 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_5NDK_026 | 1/13/1234:1241, 1/13/1257:1262 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_5NDK_027 | 1/13/1283:1284, 1/13/1380:1383 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_5NDK_028 | 1/13/1286:1287, 1/13/1376:1378 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_5NDK_029 | 1/13/1291:1295, 1/13/1369:1372 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_5NDK_345 | 1/13/1302:1306, 1/13/1342:1346 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_5NDK_031 | 1/13/1312:1317, 1/13/1328:1336 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_5NDK_032 | 1/13/1403:1407, 1/13/1433:1434 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_5NDK_033 | 1/13/1408:1412, 1/13/1428:1432 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_5NDK_034 | 1/13/1510:1517, 1/13/1528:1533 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5NDK_035 | 1/13/1545:1546, 1/13/2021:2023 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_5NDK_036 | 1/13/1548:1550, 1/13/2018:2019 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_5NDK_346 | 1/13/1556:1558, 1/13/2008:2012 | No text annotation | homologous IL_6CZR_410 NA | |
| IL_5NDK_038 | 1/13/1576:1577, 1/13/1853:1855 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_5NDK_039 | 1/13/1616:1620, 1/13/1672:1673 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_5NDK_370 | 1/13/1625:1630, 1/13/1647:1667 | No text annotation | ||
| IL_5NDK_040 | 1/13/1626:1631, 1/13/1646:1666 | No text annotation | ||
| IL_5NDK_041 | 1/13/1676:1678, 1/13/1835:1836 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_5NDK_042 | 1/13/1680:1684, 1/13/1831:1833 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_5NDK_043 | 1/13/1685:1686, 1/13/1826:1830 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_5NDK_044 | 1/13/1688:1689, 1/13/1822:1824 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_5NDK_045 | 1/13/1689:1691, 1/13/1820:1822 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.1 | |
| IL_5NDK_046 | 1/13/1752:1756, 1/13/1771:1777 | No text annotation | geometric IL_4LFB_048 IL_89862.1 | |
| IL_5NDK_047 | 1/13/1756:1760, 1/13/1770:1771 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_5NDK_048 | 1/13/1786:1789, 1/13/1802:1808 | No text annotation | homologous IL_4LFB_050 IL_32376.1 | |
| IL_5NDK_049 | 1/13/1874:1880, 1/13/1911:1917 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_5NDK_050 | 1/13/1882:1885, 1/13/1904:1909 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_5NDK_051 | 1/13/1886:1887, 1/13/1901:1903 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_5NDK_348 | 1/13/1886:1889, 1/13/1900:1903 | Double sheared | homologous IL_4LFB_067 IL_58355.1 | |
| IL_5NDK_052 | 1/13/1887:1889, 1/13/1900:1901 | Minor groove platform | homologous IL_4LFB_054 IL_34520.1 | |
| IL_5NDK_053 | 1/13/1930:1935, 1/13/1956:1961 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_5NDK_054 | 1/13/2027:2029, 1/13/2124:2127 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_5NDK_055 | 1/13/2029:2032, 1/13/2120:2124 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5NDK_056 | 1/13/2033:2035, 1/13/2117:2119 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.1 | |
| IL_5NDK_057 | 1/13/2035:2037, 1/13/2114:2117 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_5NDK_058 | 1/13/2040:2042, 1/13/2109:2111 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5NDK_059 | 1/13/2044:2047, 1/13/2104:2107 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5NDK_060 | 1/13/2059:2063, 1/13/2089:2092 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_5NDK_061 | 1/13/2063:2065, 1/13/2087:2089 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_5NDK_062 | 1/13/2068:2073, 1/13/2082:2084 | No text annotation | homologous IL_4LFB_064 IL_93811.1 | |
| IL_5NDK_063 | 1/14/24:30, 1/14/537:543 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_5NDK_064 | 1/14/36:37, 1/14/470:472 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5NDK_371 | 1/14/42:43, 1/14/463:465 | Minor groove platform | homologous IL_9DFE_348 IL_34520.1 | |
| IL_5NDK_066 | 1/14/80:84, 1/14/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5NDK_067 | 1/14/173:174, 1/14/202:204 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_5NDK_068 | 1/14/178:184, 1/14/191:198 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_5NDK_069 | 1/14/229:235, 1/14/243:248 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5NDK_070 | 1/14/270:271, 1/14/274:276 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_5NDK_071 | 1/14/292:293, 1/14/393:395 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_5NDK_072 | 1/14/297:304, 1/14/386:389 | No text annotation | ||
| IL_5NDK_073 | 1/14/305:309, 1/14/382:385 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5NDK_074 | 1/14/313:315, 1/14/375:378 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_5NDK_075 | 1/14/318:320, 1/14/368:372 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5NDK_076 | 1/14/509:512, 1/14/523:536 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_5NDK_077 | 1/14/589:591, 1/14/600:602 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_5NDK_078 | 1/14/631:635, 1/14/645:649 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_5NDK_079 | 1/14/721:723, 1/14/855:857 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_5NDK_080 | 1/14/723:727, 1/14/848:855 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_5NDK_081 | 1/14/746:747, 1/14/812:814 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_5NDK_082 | 1/14/751:752, 1/14/777:779 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_5NDK_083 | 1/14/752:756, 1/14/773:777 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5NDK_084 | 1/14/787:790, 1/14/805:807 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_5NDK_085 | 1/14/824:826, 1/14/836:840 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_5NDK_086 | 1/14/886:887, 1/14/987:989 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_5NDK_087 | 1/14/893:895, 1/14/978:981 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_5NDK_349 | 1/14/893:899, 1/14/975:981 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5NDK_088 | 1/14/895:899, 1/14/975:978 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_5NDK_350 | 1/14/907:911, 1/14/963:967 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9DFE_026 IL_38862.5 | |
| IL_5NDK_090 | 1/14/911:912, 1/14/961:963 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_5NDK_091 | 1/14/913:917, 1/14/957:960 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5NDK_092 | 1/14/924:928, 1/14/946:950 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_5NDK_093 | 1/14/929:931, 1/14/942:945 | No text annotation | ||
| IL_5NDK_094 | 1/14/999:1001, 1/14/1010:1012 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_5NDK_095 | 1/14/1042:1044, 1/14/1208:1209 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5NDK_096 | 1/14/1046:1050, 1/14/1202:1206 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5NDK_097 | 1/14/1052:1059, 1/14/1199:1200 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_5NDK_098 | 1/14/1059:1061, 1/14/1198:1199 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_5NDK_099 | 1/14/1066:1072, 1/14/1188:1193 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_5NDK_100 | 1/14/1072:1078, 1/14/1172:1188 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_5NDK_101 | 1/14/1079:1082, 1/14/1169:1171 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5NDK_372 | 1/14/1088:1099, 1/14/1156:1163 | No text annotation | ||
| IL_5NDK_102 | 1/14/1091:1100, 1/14/1155:1160 | No text annotation | ||
| IL_5NDK_373 | 1/14/1103:1139, 1/14/1148:1152 | No text annotation | ||
| IL_5NDK_103 | 1/14/1244:1246, 1/14/1296:1299 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_5NDK_104 | 1/14/1250:1254, 1/14/1289:1292 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5NDK_105 | 1/14/1256:1263, 1/14/1283:1287 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5NDK_106 | 1/14/1267:1269, 1/14/1278:1279 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5NDK_107 | 1/14/1311:1318, 1/14/2036:2042 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5NDK_108 | 1/14/1359:1362, 1/14/1652:1653 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_5NDK_354 | 1/14/1368:1372, 1/14/1380:1382 | C-loop | homologous IL_9DFE_050 IL_63596.12 | |
| IL_5NDK_110 | 1/14/1400:1404, 1/14/1425:1429 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5NDK_111 | 1/14/1406:1410, 1/14/1419:1423 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_5NDK_112 | 1/14/1464:1465, 1/14/1632:1636 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_5NDK_113 | 1/14/1466:1470, 1/14/1627:1631 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_5NDK_114 | 1/14/1482:1484, 1/14/1607:1610 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5NDK_115 | 1/14/1486:1489, 1/14/1601:1605 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5NDK_116 | 1/14/1498:1500, 1/14/1512:1513 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5NDK_117 | 1/14/1501:1502, 1/14/1509:1511 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_5NDK_118 | 1/14/1519:1523, 1/14/1569:1572 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_5NDK_119 | 1/14/1531:1532, 1/14/1555:1561 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5NDK_120 | 1/14/1538:1540, 1/14/1548:1549 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5NDK_121 | 1/14/1575:1579, 1/14/1590:1596 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_5NDK_122 | 1/14/1701:1706, 1/14/2029:2031 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_5NDK_123 | 1/14/1713:1715, 1/14/2020:2022 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_5NDK_124 | 1/14/1716:1719, 1/14/2018:2019 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_5NDK_355 | 1/14/1716:1724, 1/14/2015:2019 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_5NDK_125 | 1/14/1719:1724, 1/14/2015:2018 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_5NDK_126 | 1/14/1736:1741, 1/14/1746:1752 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5NDK_127 | 1/14/1804:1805, 1/14/2005:2007 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5NDK_128 | 1/14/1832:1838, 1/14/1847:1855 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5NDK_129 | 1/14/1871:1874, 1/14/1927:1928 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_5NDK_130 | 1/14/1875:1876, 1/14/1923:1926 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5NDK_131 | 1/14/1880:1883, 1/14/1918:1919 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5NDK_132 | 1/14/1885:1889, 1/14/1912:1916 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5NDK_133 | 1/14/1890:1894, 1/14/1907:1911 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5NDK_134 | 1/14/1958:1959, 1/14/1989:1992 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_5NDK_135 | 1/14/1959:1970, 1/14/1986:1989 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_5NDK_136 | 1/14/2075:2077, 1/14/2632:2633 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_5NDK_137 | 1/14/2079:2082, 1/14/2626:2630 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_5NDK_138 | 1/14/2092:2094, 1/14/2457:2458 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5NDK_139 | 1/14/2095:2096, 1/14/2453:2456 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_5NDK_140 | 1/14/2106:2108, 1/14/2251:2254 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5NDK_141 | 1/14/2110:2112, 1/14/2247:2249 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5NDK_142 | 1/14/2133:2135, 1/14/2204:2206 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_5NDK_356 | 1/14/2133:2162, 1/14/2180:2206 | No text annotation | ||
| IL_5NDK_143 | 1/14/2135:2146, 1/14/2202:2204 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_5NDK_144 | 1/14/2146:2152, 1/14/2186:2202 | No text annotation | ||
| IL_5NDK_145 | 1/14/2152:2162, 1/14/2180:2186 | No text annotation | ||
| IL_5NDK_146 | 1/14/2162:2165, 1/14/2176:2180 | No text annotation | ||
| IL_5NDK_147 | 1/14/2312:2314, 1/14/2332:2336 | Isolated tHS basepair with bulges | geometric IL_4WF9_086 IL_14250.1 | |
| IL_5NDK_148 | 1/14/2365:2368, 1/14/2379:2382 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5NDK_149 | 1/14/2416:2418, 1/14/2429:2430 | Single bulged A | geometric IL_5J7L_064 NA | |
| IL_5NDK_150 | 1/14/2468:2469, 1/14/2513:2515 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_5NDK_151 | 1/14/2469:2470, 1/14/2511:2513 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5NDK_357 | 1/14/2472:2474, 1/14/2508:2509 | Major groove platform | homologous IL_9DFE_093 IL_48076.7 | |
| IL_5NDK_153 | 1/14/2474:2476, 1/14/2504:2508 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5NDK_154 | 1/14/2481:2485, 1/14/2495:2499 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_5NDK_155 | 1/14/2522:2523, 1/14/2595:2597 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5NDK_156 | 1/14/2525:2527, 1/14/2589:2593 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_5NDK_157 | 1/14/2527:2528, 1/14/2586:2589 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_5NDK_158 | 1/14/2537:2538, 1/14/2555:2558 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5NDK_159 | 1/14/2606:2607, 1/14/2616:2618 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5NDK_160 | 1/14/2651:2655, 1/14/2790:2798 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5NDK_161 | 1/14/2667:2673, 1/14/2678:2683 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_5NDK_162 | 1/14/2695:2699, 1/14/2741:2743 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5NDK_163 | 1/14/2702:2706, 1/14/2734:2738 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5NDK_164 | 1/14/2710:2711, 1/14/2726:2730 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_5NDK_165 | 1/14/2753:2758, 1/14/2778:2783 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5NDK_166 | 1/14/2805:2824, 1/14/2902:2906 | No text annotation | ||
| IL_5NDK_167 | 1/14/2851:2852, 1/14/2891:2893 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5NDK_358 | 1/14/2856:2858, 1/14/2884:2887 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_5NDK_169 | 1/14/2860:2865, 1/14/2878:2882 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5NDK_170 | 1/16/19:20, 1/16/67:69 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_5NDK_171 | 1/16/25:30, 1/16/58:62 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_5NDK_172 | 1/16/32:33, 1/16/53:56 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_5NDK_173 | 1/16/36:40, 1/16/46:50 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5NDK_174 | 1/16/73:81, 1/16/100:108 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5NDK_175 | 1/1G/676:678, 1/1G/1181:1182 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_5NDK_176 | 1/1G/690:691, 1/1G/1037:1039 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_5NDK_177 | 1/1G/693:698, 1/1G/1000:1002 | No text annotation | geometric IL_4LFB_003 IL_68149.1 | |
| IL_5NDK_178 | 1/1G/700:702, 1/1G/997:998 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_5NDK_179 | 1/1G/709:712, 1/1G/742:743 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_5NDK_180 | 1/1G/713:715, 1/1G/739:741 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_5NDK_181 | 1/1G/768:771, 1/1G/872:873 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5NDK_182 | 1/1G/772:776, 1/1G/868:871 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_5NDK_183 | 1/1G/788:793, 1/1G/808:814 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_5NDK_184 | 1/1G/826:828, 1/1G/841:843 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_5NDK_185 | 1/1G/883:888, 1/1G/918:925 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5NDK_186 | 1/1G/890:893, 1/1G/915:916 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_5NDK_187 | 1/1G/933:934, 1/1G/945:949 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5NDK_188 | 1/1G/1008:1010, 1/1G/1033:1034 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_5NDK_189 | 1/1G/1012:1016, 1/1G/1030:1031 | C-loop | geometric IL_5J7L_018 NA | |
| IL_5NDK_190 | 1/1G/1016:1017, 1/1G/1028:1030 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_5NDK_191 | 1/1G/1050:1057, 1/1G/1068:1074 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_5NDK_192 | 1/1G/1086:1090, 1/1G/1113:1118 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_5NDK_193 | 1/1G/1090:1095, 1/1G/1107:1113 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_5NDK_194 | 1/1G/1133:1140, 1/1G/1169:1170 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_5NDK_195 | 1/1G/1144:1150, 1/1G/1157:1165 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5NDK_196 | 1/1G/1198:1204, 1/1G/1503:1504 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_5NDK_197 | 1/1G/1209:1213, 1/1G/1386:1390 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_5NDK_198 | 1/1G/1223:1225, 1/1G/1273:1274 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_5NDK_199 | 1/1G/1226:1227, 1/1G/1269:1272 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5NDK_200 | 1/1G/1234:1241, 1/1G/1257:1262 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_5NDK_201 | 1/1G/1283:1284, 1/1G/1380:1383 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_5NDK_202 | 1/1G/1286:1287, 1/1G/1376:1378 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_5NDK_203 | 1/1G/1291:1295, 1/1G/1369:1372 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_5NDK_360 | 1/1G/1302:1306, 1/1G/1342:1346 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_5NDK_205 | 1/1G/1312:1317, 1/1G/1328:1336 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_5NDK_206 | 1/1G/1403:1407, 1/1G/1433:1434 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_5NDK_207 | 1/1G/1408:1412, 1/1G/1428:1432 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_5NDK_208 | 1/1G/1510:1517, 1/1G/1528:1533 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5NDK_209 | 1/1G/1545:1546, 1/1G/2021:2023 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5NDK_210 | 1/1G/1548:1550, 1/1G/2018:2019 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_5NDK_374 | 1/1G/1556:1558, 1/1G/2008:2012 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_5NDK_212 | 1/1G/1576:1577, 1/1G/1853:1855 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_5NDK_213 | 1/1G/1616:1620, 1/1G/1672:1673 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_5NDK_214 | 1/1G/1676:1678, 1/1G/1835:1836 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_5NDK_215 | 1/1G/1680:1684, 1/1G/1831:1833 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_5NDK_216 | 1/1G/1685:1686, 1/1G/1826:1830 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_5NDK_217 | 1/1G/1688:1689, 1/1G/1822:1824 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_5NDK_218 | 1/1G/1689:1691, 1/1G/1820:1822 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_5NDK_219 | 1/1G/1752:1760, 1/1G/1770:1777 | No text annotation | ||
| IL_5NDK_220 | 1/1G/1874:1880, 1/1G/1911:1917 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_5NDK_221 | 1/1G/1882:1885, 1/1G/1904:1909 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_5NDK_222 | 1/1G/1886:1889, 1/1G/1900:1903 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_5NDK_223 | 1/1G/1930:1935, 1/1G/1956:1961 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_5NDK_224 | 1/1G/2027:2029, 1/1G/2124:2127 | No text annotation | geometric IL_4V88_463 NA | |
| IL_5NDK_225 | 1/1G/2029:2032, 1/1G/2120:2124 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5NDK_226 | 1/1G/2033:2035, 1/1G/2117:2119 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_01003.1 | |
| IL_5NDK_227 | 1/1G/2035:2037, 1/1G/2114:2117 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_5NDK_228 | 1/1G/2040:2042, 1/1G/2109:2111 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5NDK_229 | 1/1G/2044:2047, 1/1G/2104:2107 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5NDK_230 | 1/1G/2059:2063, 1/1G/2089:2092 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.6 | |
| IL_5NDK_231 | 1/1G/2063:2065, 1/1G/2087:2089 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.1 | |
| IL_5NDK_232 | 1/1G/2068:2073, 1/1G/2082:2084 | No text annotation | homologous IL_4LFB_064 IL_93811.1 | |
| IL_5NDK_234 | 1/1H/24:30, 1/1H/537:543 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_5NDK_235 | 1/1H/36:37, 1/1H/470:472 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5NDK_375 | 1/1H/42:43, 1/1H/463:465 | Minor groove platform | homologous IL_9DFE_348 IL_34520.1 | |
| IL_5NDK_237 | 1/1H/80:84, 1/1H/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5NDK_238 | 1/1H/173:174, 1/1H/202:204 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_5NDK_239 | 1/1H/178:184, 1/1H/191:198 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_5NDK_240 | 1/1H/229:235, 1/1H/243:248 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5NDK_241 | 1/1H/292:293, 1/1H/393:395 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_5NDK_242 | 1/1H/298:305, 1/1H/385:388 | No text annotation | ||
| IL_5NDK_243 | 1/1H/305:309, 1/1H/382:385 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5NDK_244 | 1/1H/313:315, 1/1H/375:378 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_5NDK_245 | 1/1H/318:320, 1/1H/368:372 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5NDK_246 | 1/1H/509:512, 1/1H/523:536 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_5NDK_247 | 1/1H/589:591, 1/1H/600:602 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_5NDK_248 | 1/1H/631:635, 1/1H/645:649 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_5NDK_249 | 1/1H/721:723, 1/1H/855:857 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_5NDK_250 | 1/1H/723:727, 1/1H/848:855 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_73855.1 | |
| IL_5NDK_251 | 1/1H/746:747, 1/1H/812:814 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_5NDK_252 | 1/1H/751:752, 1/1H/777:779 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_5NDK_253 | 1/1H/752:756, 1/1H/773:777 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_5NDK_254 | 1/1H/787:790, 1/1H/805:807 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_36931.1 | |
| IL_5NDK_255 | 1/1H/824:826, 1/1H/836:840 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_5NDK_256 | 1/1H/886:887, 1/1H/987:989 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_5NDK_257 | 1/1H/893:895, 1/1H/978:981 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_5NDK_363 | 1/1H/893:899, 1/1H/975:981 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5NDK_258 | 1/1H/895:899, 1/1H/975:978 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_5NDK_364 | 1/1H/907:911, 1/1H/963:967 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9DFE_026 IL_38862.5 | |
| IL_5NDK_260 | 1/1H/911:912, 1/1H/961:963 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_5NDK_261 | 1/1H/913:917, 1/1H/957:960 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5NDK_262 | 1/1H/919:921, 1/1H/953:955 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_5NDK_263 | 1/1H/924:926, 1/1H/947:950 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_5NDK_264 | 1/1H/926:928, 1/1H/946:947 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_5NDK_265 | 1/1H/929:932, 1/1H/941:945 | No text annotation | ||
| IL_5NDK_266 | 1/1H/999:1001, 1/1H/1010:1012 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_5NDK_267 | 1/1H/1042:1044, 1/1H/1208:1209 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5NDK_268 | 1/1H/1046:1050, 1/1H/1202:1206 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5NDK_269 | 1/1H/1052:1059, 1/1H/1199:1200 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_5NDK_270 | 1/1H/1059:1061, 1/1H/1198:1199 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_5NDK_271 | 1/1H/1066:1072, 1/1H/1188:1193 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_5NDK_272 | 1/1H/1072:1078, 1/1H/1172:1188 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_5NDK_273 | 1/1H/1079:1082, 1/1H/1169:1171 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5NDK_274 | 1/1H/1091:1099, 1/1H/1156:1160 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_5NDK_275 | 1/1H/1244:1246, 1/1H/1296:1299 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_5NDK_276 | 1/1H/1250:1254, 1/1H/1289:1292 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5NDK_277 | 1/1H/1256:1263, 1/1H/1283:1287 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5NDK_278 | 1/1H/1267:1269, 1/1H/1278:1279 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5NDK_279 | 1/1H/1311:1318, 1/1H/2036:2042 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5NDK_280 | 1/1H/1359:1362, 1/1H/1652:1653 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_5NDK_376 | 1/1H/1368:1372, 1/1H/1380:1382 | C-loop | homologous IL_5J7L_291 NA | |
| IL_5NDK_282 | 1/1H/1400:1404, 1/1H/1425:1429 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5NDK_283 | 1/1H/1406:1410, 1/1H/1419:1423 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_5NDK_284 | 1/1H/1464:1465, 1/1H/1632:1636 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_5NDK_285 | 1/1H/1466:1470, 1/1H/1627:1631 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_5NDK_286 | 1/1H/1482:1484, 1/1H/1607:1610 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5NDK_287 | 1/1H/1486:1489, 1/1H/1601:1605 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5NDK_288 | 1/1H/1498:1500, 1/1H/1512:1513 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5NDK_289 | 1/1H/1501:1502, 1/1H/1509:1511 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_5NDK_290 | 1/1H/1519:1523, 1/1H/1569:1572 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_5NDK_291 | 1/1H/1531:1532, 1/1H/1555:1561 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5NDK_292 | 1/1H/1538:1540, 1/1H/1548:1549 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5NDK_293 | 1/1H/1575:1579, 1/1H/1590:1596 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_5NDK_294 | 1/1H/1701:1706, 1/1H/2029:2031 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_5NDK_295 | 1/1H/1713:1715, 1/1H/2020:2022 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_5NDK_296 | 1/1H/1716:1719, 1/1H/2018:2019 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_5NDK_365 | 1/1H/1716:1724, 1/1H/2015:2019 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_5NDK_297 | 1/1H/1719:1724, 1/1H/2015:2018 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_5NDK_298 | 1/1H/1736:1741, 1/1H/1746:1752 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_5NDK_299 | 1/1H/1804:1805, 1/1H/2005:2007 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5NDK_300 | 1/1H/1832:1838, 1/1H/1847:1855 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5NDK_301 | 1/1H/1871:1874, 1/1H/1927:1928 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_5NDK_302 | 1/1H/1875:1876, 1/1H/1923:1926 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5NDK_303 | 1/1H/1880:1883, 1/1H/1918:1919 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5NDK_304 | 1/1H/1885:1889, 1/1H/1912:1916 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5NDK_305 | 1/1H/1890:1894, 1/1H/1907:1911 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5NDK_306 | 1/1H/1958:1959, 1/1H/1989:1992 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_5NDK_307 | 1/1H/1959:1970, 1/1H/1986:1989 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_5NDK_308 | 1/1H/2075:2077, 1/1H/2632:2633 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5NDK_309 | 1/1H/2079:2082, 1/1H/2626:2630 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_5NDK_310 | 1/1H/2092:2094, 1/1H/2457:2458 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5NDK_311 | 1/1H/2095:2096, 1/1H/2453:2456 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5NDK_312 | 1/1H/2106:2108, 1/1H/2251:2254 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5NDK_313 | 1/1H/2110:2112, 1/1H/2247:2249 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5NDK_314 | 1/1H/2133:2135, 1/1H/2204:2206 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_5NDK_367 | 1/1H/2135:2154, 1/1H/2184:2204 | No text annotation | ||
| IL_5NDK_315 | 1/1H/2154:2161, 1/1H/2180:2184 | Kink-turn | homologous IL_5J7L_330 NA | |
| IL_5NDK_316 | 1/1H/2312:2314, 1/1H/2332:2336 | Isolated tHS basepair with bulges | geometric IL_4WF9_086 IL_14250.1 | |
| IL_5NDK_317 | 1/1H/2365:2368, 1/1H/2379:2382 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5NDK_369 | 1/1H/2416:2418, 1/1H/2429:2430 | Major groove platform | homologous IL_7A0S_082 IL_48076.7 | |
| IL_5NDK_319 | 1/1H/2468:2469, 1/1H/2513:2515 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_5NDK_320 | 1/1H/2469:2470, 1/1H/2511:2513 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5NDK_321 | 1/1H/2472:2474, 1/1H/2508:2509 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_5NDK_322 | 1/1H/2474:2476, 1/1H/2504:2508 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_5NDK_323 | 1/1H/2481:2485, 1/1H/2495:2499 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_5NDK_324 | 1/1H/2522:2523, 1/1H/2595:2597 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5NDK_325 | 1/1H/2525:2527, 1/1H/2589:2593 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_5NDK_326 | 1/1H/2527:2528, 1/1H/2586:2589 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_5NDK_327 | 1/1H/2537:2538, 1/1H/2555:2558 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5NDK_328 | 1/1H/2606:2607, 1/1H/2616:2618 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5NDK_329 | 1/1H/2651:2655, 1/1H/2790:2798 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5NDK_330 | 1/1H/2667:2673, 1/1H/2678:2683 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_5NDK_331 | 1/1H/2695:2699, 1/1H/2741:2743 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5NDK_332 | 1/1H/2702:2706, 1/1H/2734:2738 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5NDK_333 | 1/1H/2710:2711, 1/1H/2726:2730 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_5NDK_334 | 1/1H/2753:2758, 1/1H/2778:2783 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_5NDK_335 | 1/1H/2805:2824, 1/1H/2902:2906 | No text annotation | ||
| IL_5NDK_336 | 1/1H/2851:2852, 1/1H/2891:2893 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5NDK_337 | 1/1H/2856:2859, 1/1H/2883:2887 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_5NDK_338 | 1/1H/2860:2865, 1/1H/2878:2882 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5NDK_339 | 1/1J/19:20, 1/1J/67:69 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.1 | |
| IL_5NDK_340 | 1/1J/25:30, 1/1J/58:62 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_5NDK_341 | 1/1J/32:33, 1/1J/53:56 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.1 | |
| IL_5NDK_342 | 1/1J/36:40, 1/1J/46:50 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5NDK_343 | 1/1J/73:81, 1/1J/100:108 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NDK_009 | tWH-tWH-tHW-tHW | ||
| IL_5NDK_030 | No text annotation | ||
| IL_5NDK_037 | No text annotation | ||
| IL_5NDK_347 | No text annotation | ||
| IL_5NDK_065 | Major groove platform with extra cWW | ||
| IL_5NDK_089 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5NDK_351 | No text annotation | ||
| IL_5NDK_352 | No text annotation | ||
| IL_5NDK_353 | No text annotation | ||
| IL_5NDK_109 | C-loop with extra cWW pair | ||
| IL_5NDK_152 | Major groove platform with extra pair | ||
| IL_5NDK_168 | No text annotation | ||
| IL_5NDK_359 | Major groove platform with extra cWW | ||
| IL_5NDK_204 | No text annotation | ||
| IL_5NDK_211 | No text annotation | ||
| IL_5NDK_361 | Isolated non-canonical cWW pair | ||
| IL_5NDK_233 | Single stack bend | ||
| IL_5NDK_362 | No text annotation | ||
| IL_5NDK_236 | Major groove platform with extra cWW | ||
| IL_5NDK_259 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5NDK_281 | C-loop with extra cWW pair | ||
| IL_5NDK_366 | Partly complementary | ||
| IL_5NDK_377 | Isolated non-canonical cWW pair | ||
| IL_5NDK_368 | No text annotation | ||
| IL_5NDK_318 | Major groove platform with extra pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NDK_001 | 1/13/692:693, 1/13/1002:1008, 1/13/1034:1036 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5NDK_053 | 1/13/692:698, 1/13/1000:1008, 1/13/1034:1036 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_5NDK_002 | 1/13/1215:1217, 1/13/1280:1283, 1/13/1383:1384 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_5NDK_054 | 1/13/1215:1217, 1/13/1280:1284, 1/13/1380:1384 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_5NDK_003 | 1/13/1301:1302, 1/13/1346:1354, 1/13/1361:1363 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_5NDK_004 | 1/13/1455:1458, 1/13/1480:1484, 1/13/1491:1497 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_5NDK_005 | 1/13/1559:1562, 1/13/1971:1977, 1/13/2000:2007 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_5NDK_006 | 1/13/1566:1569, 1/13/1862:1864, 1/13/1964:1967 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_5NDK_007 | 1/13/1578:1585, 1/13/1596:1607, 1/13/1848:1852 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_5NDK_008 | 1/13/1613:1616, 1/13/1673:1675, 1/13/1837:1842 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_5NDK_055 | 1/13/1613:1620, 1/13/1672:1675, 1/13/1837:1842 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_5NDK_009 | 1/13/1691:1696, 1/13/1735:1741, 1/13/1814:1820 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_5NDK_056 | 1/13/1701:1702, 1/13/1711:1714, 1/13/1727:1730 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_5NDK_011 | 1/13/1744:1746, 1/13/1783:1786, 1/13/1808:1811 | No text annotation | homologous J3_4LFB_008 J3_82365.5 | |
| J3_5NDK_057 | 1/13/1744:1746, 1/13/1783:1789, 1/13/1802:1811 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_5NDK_012 | 1/13/1864:1868, 1/13/1923:1930, 1/13/1961:1964 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_5NDK_013 | 1/14/30:31, 1/14/502:509, 1/14/536:537 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5NDK_058 | 1/14/30:31, 1/14/502:512, 1/14/523:537 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_5NDK_059 | 1/14/32:35, 1/14/473:489, 1/14/496:501 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_5NDK_014 | 1/14/55:56, 1/14/69:75, 1/14/108:112 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_5NDK_015 | 1/14/259:263, 1/14/283:290, 1/14/397:398 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5NDK_060 | 1/14/322:326, 1/14/341:350, 1/14/362:366 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_5NDK_016 | 1/14/732:738, 1/14/822:824, 1/14/840:843 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_5NDK_017 | 1/14/747:749, 1/14/781:785, 1/14/809:812 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5NDK_018 | 1/14/1103:1107, 1/14/1127:1139, 1/14/1148:1152 | No text annotation | ||
| J3_5NDK_019 | 1/14/1347:1352, 1/14/1674:1676, 1/14/1689:1692 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_5NDK_020 | 1/14/1355:1358, 1/14/1654:1660, 1/14/1669:1671 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5NDK_021 | 1/14/1393:1399, 1/14/1430:1434, 1/14/1451:1452 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5NDK_061 | 1/14/1473:1478, 1/14/1614:1615, 1/14/1618:1624 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_5NDK_022 | 1/14/2116:2118, 1/14/2221:2225, 1/14/2238:2243 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5NDK_062 | 1/14/2297:2299, 1/14/2399:2410, 1/14/2436:2442 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_5NDK_023 | 1/14/2310:2312, 1/14/2336:2338, 1/14/2347:2352 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5NDK_024 | 1/14/2532:2535, 1/14/2560:2562, 1/14/2576:2582 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5NDK_025 | 1/14/2827:2828, 1/14/2844:2849, 1/14/2895:2899 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_5NDK_026 | 1/16/13:18, 1/16/70:71, 1/16/110:112 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_5NDK_027 | 1/1G/692:693, 1/1G/1002:1008, 1/1G/1034:1036 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5NDK_063 | 1/1G/692:698, 1/1G/1000:1008, 1/1G/1034:1036 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_5NDK_028 | 1/1G/1215:1217, 1/1G/1280:1283, 1/1G/1383:1384 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_5NDK_064 | 1/1G/1215:1217, 1/1G/1280:1284, 1/1G/1380:1384 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_5NDK_029 | 1/1G/1301:1302, 1/1G/1346:1354, 1/1G/1361:1363 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_5NDK_030 | 1/1G/1455:1458, 1/1G/1480:1484, 1/1G/1491:1497 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_5NDK_031 | 1/1G/1559:1562, 1/1G/1971:1977, 1/1G/2000:2007 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_5NDK_032 | 1/1G/1566:1569, 1/1G/1862:1864, 1/1G/1964:1967 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_5NDK_033 | 1/1G/1578:1585, 1/1G/1596:1607, 1/1G/1848:1852 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_5NDK_034 | 1/1G/1613:1616, 1/1G/1673:1675, 1/1G/1837:1842 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_5NDK_065 | 1/1G/1613:1620, 1/1G/1672:1675, 1/1G/1837:1842 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_5NDK_035 | 1/1G/1627:1630, 1/1G/1647:1652, 1/1G/1661:1665 | No text annotation | ||
| J3_5NDK_036 | 1/1G/1691:1696, 1/1G/1735:1741, 1/1G/1814:1820 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_5NDK_067 | 1/1G/1701:1702, 1/1G/1711:1714, 1/1G/1727:1730 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_5NDK_038 | 1/1G/1744:1746, 1/1G/1783:1789, 1/1G/1802:1811 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_5NDK_039 | 1/1G/1864:1868, 1/1G/1923:1930, 1/1G/1961:1964 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_5NDK_040 | 1/1H/30:31, 1/1H/502:509, 1/1H/536:537 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5NDK_068 | 1/1H/30:31, 1/1H/502:512, 1/1H/523:537 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_5NDK_069 | 1/1H/32:35, 1/1H/473:489, 1/1H/496:501 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_5NDK_041 | 1/1H/55:56, 1/1H/69:75, 1/1H/108:112 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_5NDK_042 | 1/1H/259:263, 1/1H/283:290, 1/1H/397:398 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5NDK_070 | 1/1H/322:326, 1/1H/341:350, 1/1H/362:366 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_5NDK_043 | 1/1H/732:738, 1/1H/822:824, 1/1H/840:843 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_5NDK_044 | 1/1H/747:749, 1/1H/781:785, 1/1H/809:812 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5NDK_045 | 1/1H/1347:1352, 1/1H/1674:1676, 1/1H/1689:1692 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_5NDK_046 | 1/1H/1355:1358, 1/1H/1654:1660, 1/1H/1669:1671 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5NDK_047 | 1/1H/1393:1399, 1/1H/1430:1434, 1/1H/1451:1452 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5NDK_071 | 1/1H/1473:1478, 1/1H/1614:1615, 1/1H/1618:1624 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_5NDK_048 | 1/1H/2116:2118, 1/1H/2221:2225, 1/1H/2238:2243 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5NDK_072 | 1/1H/2297:2299, 1/1H/2399:2410, 1/1H/2436:2442 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_5NDK_049 | 1/1H/2310:2312, 1/1H/2336:2338, 1/1H/2347:2352 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5NDK_050 | 1/1H/2532:2535, 1/1H/2560:2562, 1/1H/2576:2582 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5NDK_051 | 1/1H/2827:2828, 1/1H/2844:2849, 1/1H/2895:2899 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_5NDK_052 | 1/1J/13:18, 1/1J/70:71, 1/1J/110:112 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_5NDK_001 | 1/13/754:761, 1/13/880:881, 1/13/927:930, 1/13/952:953 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_5NDK_002 | 1/13/782:784, 1/13/818:823, 1/13/846:850, 1/13/860:862 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5NDK_003 | 1/13/1204:1206, 1/13/1393:1398, 1/13/1439:1450, 1/13/1502:1503 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_5NDK_004 | 1/14/258:259, 1/14/398:403, 1/14/427:434, 1/14/450:453 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_5NDK_005 | 1/14/322:326, 1/14/341:344, 1/14/348:350, 1/14/362:366 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5NDK_006 | 1/14/626:629, 1/14/651:655, 1/14/662:665, 1/14/677:705 | No text annotation | ||
| J4_5NDK_007 | 1/14/1319:1325, 1/14/1343:1344, 1/14/1695:1698, 1/14/2034:2035 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_5NDK_008 | 1/14/1359:1363, 1/14/1387:1392, 1/14/1453:1454, 1/14/1646:1653 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_5NDK_009 | 1/14/1362:1363, 1/14/1387:1392, 1/14/1453:1454, 1/14/1646:1652 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_5NDK_010 | 1/14/1493:1495, 1/14/1516:1517, 1/14/1574:1575, 1/14/1596:1597 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_5NDK_011 | 1/14/1806:1810, 1/14/1822:1826, 1/14/1861:1864, 1/14/2000:2004 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_5NDK_012 | 1/14/1867:1869, 1/14/1930:1931, 1/14/1949:1958, 1/14/1992:1997 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5NDK_013 | 1/14/2300:2304, 1/14/2358:2362, 1/14/2385:2387, 1/14/2396:2398 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_5NDK_014 | 1/14/2658:2661, 1/14/2689:2691, 1/14/2747:2751, 1/14/2785:2787 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_5NDK_015 | 1/1G/754:761, 1/1G/880:881, 1/1G/927:930, 1/1G/952:953 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_5NDK_016 | 1/1G/782:784, 1/1G/818:823, 1/1G/846:850, 1/1G/860:862 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5NDK_017 | 1/1G/1204:1206, 1/1G/1393:1398, 1/1G/1439:1450, 1/1G/1502:1503 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_5NDK_018 | 1/1H/258:259, 1/1H/398:403, 1/1H/427:434, 1/1H/450:453 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_5NDK_019 | 1/1H/322:326, 1/1H/341:344, 1/1H/348:350, 1/1H/362:366 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5NDK_020 | 1/1H/1319:1325, 1/1H/1343:1344, 1/1H/1695:1698, 1/1H/2034:2035 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_5NDK_021 | 1/1H/1359:1363, 1/1H/1387:1392, 1/1H/1453:1454, 1/1H/1646:1653 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_5NDK_022 | 1/1H/1362:1363, 1/1H/1387:1392, 1/1H/1453:1454, 1/1H/1646:1652 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_5NDK_023 | 1/1H/1493:1495, 1/1H/1516:1517, 1/1H/1574:1575, 1/1H/1596:1597 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_5NDK_024 | 1/1H/1806:1810, 1/1H/1822:1826, 1/1H/1861:1864, 1/1H/2000:2004 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_5NDK_025 | 1/1H/1867:1869, 1/1H/1930:1931, 1/1H/1949:1958, 1/1H/1992:1997 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5NDK_026 | 1/1H/2300:2304, 1/1H/2358:2362, 1/1H/2385:2387, 1/1H/2396:2398 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5NDK_027 | 1/1H/2658:2661, 1/1H/2689:2691, 1/1H/2747:2751, 1/1H/2785:2787 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_5NDK_028 | 1/V1/7:10, 1/V1/25:27, 1/V1/43:49, 1/V1/65:66 | tRNA junction | homologous J4_2CSX_001 J4_36296.3 | |
| J4_5NDK_029 | 1/V4/7:10, 1/V4/25:27, 1/V4/43:49, 1/V4/65:66 | tRNA junction | homologous J4_2CSX_001 J4_36296.3 | |
| J4_5NDK_030 | 1/W1/7:10, 1/W1/25:27, 1/W1/43:49, 1/W1/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_58311.1 | |
| J4_5NDK_034 | 1/W4/7:10, 1/W4/25:27, 1/W4/43:49, 1/W4/65:66 | tRNA junction | homologous J4_6UGG_002 J4_58311.1 | |
| J4_5NDK_032 | 1/X1/7:10, 1/X1/25:27, 1/X1/43:49, 1/X1/65:66 | tRNA junction | homologous J4_3TUP_001 J4_58311.1 | |
| J4_5NDK_033 | 1/X4/7:10, 1/X4/25:27, 1/X4/43:49, 1/X4/65:66 | tRNA junction | homologous J4_6UFM_001 NA | |
| J5_5NDK_001 | 1/13/682:685, 1/13/1044:1047, 1/13/1077:1082, 1/13/1122:1129, 1/13/1174:1177 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5NDK_002 | 1/13/704:707, 1/13/745:752, 1/13/955:957, 1/13/978:980, 1/13/991:995 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_5NDK_003 | 1/14/46:53, 1/14/114:119, 1/14/128:129, 1/14/148:150, 1/14/166:168 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5NDK_004 | 1/14/258:263, 1/14/283:290, 1/14/397:403, 1/14/427:434, 1/14/450:453 | No text annotation | ||
| J5_5NDK_005 | 1/14/558:560, 1/14/585:589, 1/14/602:604, 1/14/1310:1311, 1/14/2042:2043 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_5NDK_006 | 1/14/609:614, 1/14/717:720, 1/14/858:861, 1/14/1243:1244, 1/14/1299:1305 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_5NDK_007 | 1/14/1724:1732, 1/14/1756:1757, 1/14/1785:1786, 1/14/1790:1798, 1/14/2013:2015 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_5NDK_008 | 1/14/2082:2089, 1/14/2461:2468, 1/14/2515:2522, 1/14/2597:2603, 1/14/2621:2626 | No text annotation | ||
| J5_5NDK_009 | 1/14/2099:2102, 1/14/2258:2261, 1/14/2273:2274, 1/14/2296:2297, 1/14/2442:2450 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_5NDK_010 | 1/1G/682:685, 1/1G/1044:1047, 1/1G/1077:1082, 1/1G/1122:1129, 1/1G/1174:1177 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5NDK_011 | 1/1G/704:707, 1/1G/745:752, 1/1G/955:957, 1/1G/978:980, 1/1G/991:995 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_5NDK_012 | 1/1H/46:53, 1/1H/114:119, 1/1H/128:129, 1/1H/148:150, 1/1H/166:168 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5NDK_013 | 1/1H/258:263, 1/1H/283:290, 1/1H/397:403, 1/1H/427:434, 1/1H/450:453 | No text annotation | ||
| J5_5NDK_014 | 1/1H/558:560, 1/1H/585:589, 1/1H/602:604, 1/1H/1310:1311, 1/1H/2042:2043 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_5NDK_015 | 1/1H/609:614, 1/1H/717:720, 1/1H/858:861, 1/1H/1243:1244, 1/1H/1299:1305 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_5NDK_016 | 1/1H/626:629, 1/1H/651:655, 1/1H/662:665, 1/1H/677:683, 1/1H/700:705 | No text annotation | ||
| J5_5NDK_017 | 1/1H/1724:1732, 1/1H/1756:1757, 1/1H/1785:1786, 1/1H/1790:1798, 1/1H/2013:2015 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_5NDK_018 | 1/1H/2082:2089, 1/1H/2461:2468, 1/1H/2515:2522, 1/1H/2597:2603, 1/1H/2621:2626 | No text annotation | ||
| J5_5NDK_019 | 1/1H/2099:2102, 1/1H/2258:2261, 1/1H/2273:2274, 1/1H/2296:2297, 1/1H/2442:2450 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J6_5NDK_001 | 1/14/44:45, 1/14/169:173, 1/14/204:214, 1/14/221:225, 1/14/252:256, 1/14/455:462 | No text annotation | ||
| J6_5NDK_002 | 1/14/2099:2102, 1/14/2258:2261, 1/14/2273:2274, 1/14/2296:2299, 1/14/2399:2410, 1/14/2436:2450 | No text annotation | ||
| J6_5NDK_003 | 1/1H/44:45, 1/1H/169:173, 1/1H/204:214, 1/1H/221:225, 1/1H/252:256, 1/1H/455:462 | No text annotation | ||
| J6_5NDK_004 | 1/1H/2099:2102, 1/1H/2258:2261, 1/1H/2273:2274, 1/1H/2296:2299, 1/1H/2399:2410, 1/1H/2436:2450 | No text annotation | ||
| J7_5NDK_001 | 1/14/8:15, 1/14/552:558, 1/14/2043:2048, 1/14/2065:2068, 1/14/2640:2645, 1/14/2804:2805, 1/14/2906:2907 | No text annotation | ||
| J7_5NDK_002 | 1/14/866:871, 1/14/884:885, 1/14/990:993, 1/14/1018:1024, 1/14/1035:1039, 1/14/1212:1213, 1/14/1233:1238 | No text annotation | ||
| J7_5NDK_003 | 1/1H/8:15, 1/1H/552:558, 1/1H/2043:2048, 1/1H/2065:2068, 1/1H/2640:2645, 1/1H/2804:2805, 1/1H/2906:2907 | No text annotation | ||
| J7_5NDK_004 | 1/1H/866:871, 1/1H/884:885, 1/1H/990:993, 1/1H/1018:1024, 1/1H/1035:1039, 1/1H/1212:1213, 1/1H/1233:1238 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NDK_010 | No text annotation | ||
| J3_5NDK_066 | No text annotation | ||
| J3_5NDK_037 | No text annotation | ||
| J3_5NDK_073 | No text annotation | ||
| J4_5NDK_031 | No text annotation |
Coloring options: