HL_5NDK_002

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGCGGGUCCGUG

Length

12 nucleotides

Bulged bases

5NDK|1|13|G|723, 5NDK|1|13|U|731

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDK_002 not in the Motif Atlas

Homologous match to HL_6CZR_073

Geometric discrepancy: 0.3212

The information below is about HL_6CZR_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDK|1|13|C|718
5NDK|1|13|G|719
5NDK|1|13|C|720
5NDK|1|13|G|721
5NDK|1|13|G|722
5NDK|1|13|G|723
5NDK|1|13|U|731
5NDK|1|13|C|732
5NDK|1|13|C|733
5NDK|1|13|G|734
5NDK|1|13|U|735
5NDK|1|13|G|736

Current chains

Chain 13

16S ribosomal RNA

Nearby chains