HL_5NDK_028
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_028 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.0828
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|13|C|1941
5NDK|1|13|U|1942
5NDK|1|13|G|1943
5NDK|1|13|C|1944
5NDK|1|13|A|1945
5NDK|1|13|A|1946
5NDK|1|13|C|1947
5NDK|1|13|C|1948
5NDK|1|13|C|1949
5NDK|1|13|G|1950
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain AI
- 30S ribosomal protein S19
- Chain M8
- 50S ribosomal protein L31
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