HL_5NDK_044

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5NDK|1|14|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDK_044 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0516

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NDK|1|14|G|410
5NDK|1|14|U|411
5NDK|1|14|U|412
5NDK|1|14|C|413
5NDK|1|14|G|414
5NDK|1|14|U|415
5NDK|1|14|G|416
5NDK|1|14|G|417
5NDK|1|14|A|418
5NDK|1|14|G|419
5NDK|1|14|C|420

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28