HL_5NDK_120

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

5NDK|1|1G|U|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDK_120 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.3034

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5NDK|1|1G|G|1466
5NDK|1|1G|G|1467
5NDK|1|1G|U|1468
5NDK|1|1G|C|1469
5NDK|1|1G|U|1470
5NDK|1|1G|C|1471
5NDK|1|1G|C|1472

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 9A

30S ribosomal protein S18