HL_5NDK_161

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDK|1|1H|G|932
5NDK|1|1H|C|933
5NDK|1|1H|C|934
5NDK|1|1H|C|935
5NDK|1|1H|A|936
5NDK|1|1H|C|937
5NDK|1|1H|C|938
5NDK|1|1H|A|939
5NDK|1|1H|G|940
5NDK|1|1H|C|941

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 4I

30S ribosomal protein S13

Chain W1

Transfer RNA; tRNA