HL_5NDK_191
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_191 not in the Motif Atlas
- Homologous match to HL_7RQB_056
- Geometric discrepancy: 0.0678
- The information below is about HL_7RQB_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12078.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
5NDK|1|1H|C|2339
5NDK|1|1H|G|2340
5NDK|1|1H|C|2341
5NDK|1|1H|A|2342
5NDK|1|1H|A|2343
5NDK|1|1H|G|2344
5NDK|1|1H|G|2345
5NDK|1|1H|G|2346
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 41
- 50S ribosomal protein L5
- Chain 88
- 50S ribosomal protein L16
- Chain I8
- 50S ribosomal protein L27
- Chain X1
- Transfer RNA; tRNA
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