Loop HL_5NDK

3D structure

PDB id: 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å

Loop

Sequence: GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAAUAGCUCAC
Length: 50 nucleotides
Bulged bases: 5NDK|1|14|U|1109, 5NDK|1|14|A|1115, 5NDK|1|14|G|1119, 5NDK|1|14|G|1137, 5NDK|1|14|A|1143
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NDK|1|14|G|1103
5NDK|1|14|G|1104
5NDK|1|14|A|1105
5NDK|1|14|U|1106
5NDK|1|14|G|1107
5NDK|1|14|U|1108
5NDK|1|14|U|1109
5NDK|1|14|G|1110
5NDK|1|14|G|1111
5NDK|1|14|C|1112
5NDK|1|14|U|1113
5NDK|1|14|U|1114
5NDK|1|14|A|1115
5NDK|1|14|G|1116
5NDK|1|14|A|1117
5NDK|1|14|A|1118
5NDK|1|14|G|1119
5NDK|1|14|C|1120
5NDK|1|14|A|1121
5NDK|1|14|G|1122
5NDK|1|14|C|1123
5NDK|1|14|C|1124
5NDK|1|14|A|1125
5NDK|1|14|U|1126
5NDK|1|14|C|1127
5NDK|1|14|A|1128
5NDK|1|14|U|1129
5NDK|1|14|U|1130
5NDK|1|14|U|1131
5NDK|1|14|A|1132
5NDK|1|14|A|1133
5NDK|1|14|A|1134
5NDK|1|14|G|1135
5NDK|1|14|A|1136
5NDK|1|14|G|1137
5NDK|1|14|U|1138
5NDK|1|14|G|1139
5NDK|1|14|C|1140
5NDK|1|14|G|1141
5NDK|1|14|U|1142
5NDK|1|14|A|1143
5NDK|1|14|A|1144
5NDK|1|14|U|1145
5NDK|1|14|A|1146
5NDK|1|14|G|1147
5NDK|1|14|C|1148
5NDK|1|14|U|1149
5NDK|1|14|C|1150
5NDK|1|14|A|1151
5NDK|1|14|C|1152

Current chains

Chain 14: 23S ribosomal RNA

Nearby chains

Chain 59: 50S ribosomal protein L6

HL_5NDK_240