HL_5NDV_038

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACCUUG

Length

7 nucleotides

Bulged bases

5NDV|1|1|U|1764

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_038 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1235

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5NDV|1|1|C|1759
5NDV|1|1|A|1760
5NDV|1|1|C|1761
5NDV|1|1|C|1762
5NDV|1|1|U|1763
5NDV|1|1|U|1764
5NDV|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain N2

60S ribosomal protein L22-A