HL_5NDV_053

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

5NDV|1|1|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_053 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.349

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5NDV|1|1|C|2567
5NDV|1|1|C|2568
5NDV|1|1|A|2569
5NDV|1|1|U|2570
5NDV|1|1|U|2571
5NDV|1|1|C|2572
5NDV|1|1|G|2573
5NDV|1|1|G|2574

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N7

60S ribosomal protein L27-A