HL_5NDV_068

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

5NDV|1|1|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_068 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2899

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

5NDV|1|1|C|3194
5NDV|1|1|U|3195
5NDV|1|1|U|3196
5NDV|1|1|G|3197

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L9

60S ribosomal protein L9-A

Chain M4

60S ribosomal protein L14-A