HL_5NDV_082

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAUUCAG

Length

9 nucleotides

Bulged bases

5NDV|1|2|A|452, 5NDV|1|2|U|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_082 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3604

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5NDV|1|2|C|449
5NDV|1|2|U|450
5NDV|1|2|A|451
5NDV|1|2|A|452
5NDV|1|2|U|453
5NDV|1|2|U|454
5NDV|1|2|C|455
5NDV|1|2|A|456
5NDV|1|2|G|457

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A