HL_5NDV_145

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUGAAUGCAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_145 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2842

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

5NDV|1|5|C|1562
5NDV|1|5|C|1563
5NDV|1|5|U|1564
5NDV|1|5|G|1565
5NDV|1|5|A|1566
5NDV|1|5|A|1571
5NDV|1|5|U|1572
5NDV|1|5|G|1573
5NDV|1|5|C|1574
5NDV|1|5|A|1575
5NDV|1|5|G|1576
5NDV|1|5|G|1577

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain n5

60S ribosomal protein L25