HL_5NDV_167

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

5NDV|1|5|A|2637, 5NDV|1|5|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_167 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.058

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5NDV|1|5|U|2633
5NDV|1|5|U|2634
5NDV|1|5|A|2635
5NDV|1|5|A|2636
5NDV|1|5|A|2637
5NDV|1|5|C|2638
5NDV|1|5|G|2639
5NDV|1|5|A|2640
5NDV|1|5|U|2641
5NDV|1|5|A|2642
5NDV|1|5|A|2643
5NDV|1|5|C|2644
5NDV|1|5|G|2645

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain n1

60S ribosomal protein L21-A

Chain n9

60S ribosomal protein L29