HL_5NDV_206

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5NDV|1|6|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_206 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3875

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

5NDV|1|6|U|1055
5NDV|1|6|U|1056
5NDV|1|6|U|1057
5NDV|1|6|U|1058
5NDV|1|6|U|1059
5NDV|1|6|U|1060
5NDV|1|6|A|1061
5NDV|1|6|A|1062
5NDV|1|6|U|1063
5NDV|1|6|G|1064

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A