HL_5NDV_240

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5NDV|1|6|U|232, 5NDV|1|6|C|233, 5NDV|1|6|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_240 not in the Motif Atlas

Geometric match to HL_8Y0B_001

Geometric discrepancy: 0.3795

The information below is about HL_8Y0B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5NDV|1|6|C|230
5NDV|1|6|U|231
5NDV|1|6|U|232
5NDV|1|6|C|233
5NDV|1|6|G|234
5NDV|1|6|G|235

Current chains

Chain 6

18S ribosomal RNA

Nearby chains