HL_5NDW_074

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5NDW|1|2|U|158, 5NDW|1|2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDW_074 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.0922

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5NDW|1|2|G|154
5NDW|1|2|U|155
5NDW|1|2|A|156
5NDW|1|2|A|157
5NDW|1|2|U|158
5NDW|1|2|U|159
5NDW|1|2|C|160

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S6

40S ribosomal protein S6-A