HL_5NDW_081
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5NDW|1|2|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_081 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0589
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NDW|1|2|C|393
5NDW|1|2|C|394
5NDW|1|2|U|395
5NDW|1|2|G|396
5NDW|1|2|A|397
5NDW|1|2|G|398
5NDW|1|2|A|399
5NDW|1|2|A|400
5NDW|1|2|A|401
5NDW|1|2|C|402
5NDW|1|2|G|403
5NDW|1|2|G|404
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D4
- 40S ribosomal protein S24-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S6
- 40S ribosomal protein S6-A
- Chain S8
- 40S ribosomal protein S8-A
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