HL_5NDW_137

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5NDW|1|5|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDW_137 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.188

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NDW|1|5|C|1076
5NDW|1|5|U|1077
5NDW|1|5|U|1078
5NDW|1|5|A|1079
5NDW|1|5|A|1080
5NDW|1|5|U|1081
5NDW|1|5|U|1082
5NDW|1|5|G|1083

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain n9

60S ribosomal protein L29