HL_5NDW_207
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5NDW|1|6|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_207 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.0824
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5NDW|1|6|G|997
5NDW|1|6|A|998
5NDW|1|6|U|999
5NDW|1|6|C|1000
5NDW|1|6|A|1001
5NDW|1|6|G|1002
5NDW|1|6|A|1003
5NDW|1|6|U|1004
5NDW|1|6|A|1005
5NDW|1|6|C|1006
5NDW|1|6|C|1007
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain c4
- 40S ribosomal protein S14-B
Coloring options: