HL_5NG8_002

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGUAAGUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_002 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.1651

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5NG8|1|AA|U|87
5NG8|1|AA|G|88
5NG8|1|AA|U|89
5NG8|1|AA|A|90
5NG8|1|AA|A|91
5NG8|1|AA|G|92
5NG8|1|AA|U|93
5NG8|1|AA|A|94
5NG8|1|AA|A|95

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23

Chain AS

50S ribosomal protein L24

Chain AW

50S ribosomal protein L29