HL_5NG8_018

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUUUGUAGAA

Length

10 nucleotides

Bulged bases

5NG8|1|AA|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_018 not in the Motif Atlas

Geometric match to HL_4WF9_018

Geometric discrepancy: 0.0782

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5NG8|1|AA|U|609
5NG8|1|AA|U|610
5NG8|1|AA|U|611
5NG8|1|AA|U|612
5NG8|1|AA|G|613
5NG8|1|AA|U|614
5NG8|1|AA|A|615
5NG8|1|AA|G|616
5NG8|1|AA|A|617
5NG8|1|AA|A|618

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AJ

50S ribosomal protein L15

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21

Chain AZ

50S ribosomal protein L32