HL_5NG8_035

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5NG8|1|AA|U|1433, 5NG8|1|AA|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_035 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.1256

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5NG8|1|AA|G|1426
5NG8|1|AA|U|1427
5NG8|1|AA|U|1428
5NG8|1|AA|G|1429
5NG8|1|AA|A|1430
5NG8|1|AA|U|1431
5NG8|1|AA|A|1432
5NG8|1|AA|U|1433
5NG8|1|AA|U|1434
5NG8|1|AA|C|1435

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23