HL_5NG8_046

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUAUAAC

Length

7 nucleotides

Bulged bases

5NG8|1|AA|U|1944

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_046 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3344

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

5NG8|1|AA|G|1937
5NG8|1|AA|U|1938
5NG8|1|AA|A|1939
5NG8|1|AA|U|1944
5NG8|1|AA|A|1945
5NG8|1|AA|A|1946
5NG8|1|AA|C|1947

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA