HL_5NG8_064

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5NG8|1|AA|G|2778, 5NG8|1|AA|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_064 not in the Motif Atlas

Geometric match to HL_4V9F_068

Geometric discrepancy: 0.1042

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

5NG8|1|AA|C|2772
5NG8|1|AA|U|2773
5NG8|1|AA|G|2774
5NG8|1|AA|A|2775
5NG8|1|AA|A|2776
5NG8|1|AA|A|2777
5NG8|1|AA|G|2778
5NG8|1|AA|C|2779
5NG8|1|AA|A|2780
5NG8|1|AA|U|2781
5NG8|1|AA|C|2782
5NG8|1|AA|U|2783
5NG8|1|AA|A|2784
5NG8|1|AA|A|2785
5NG8|1|AA|G|2786

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6

Chain AH

50S ribosomal protein L13