HL_5NG8_069

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUUACG

Length

6 nucleotides

Bulged bases

5NG8|1|AB|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_069 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.2485

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

5NG8|1|AB|C|83
5NG8|1|AB|U|84
5NG8|1|AB|U|85
5NG8|1|AB|A|86
5NG8|1|AB|C|87
5NG8|1|AB|G|88

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AK

50S ribosomal protein L16

Chain AX

50S ribosomal protein L30