HL_5NG8_113

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5NG8|1|BA|A|372, 5NG8|1|BA|A|373, 5NG8|1|BA|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_113 not in the Motif Atlas

Geometric match to HL_4V9F_012

Geometric discrepancy: 0.1065

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

5NG8|1|BA|G|370
5NG8|1|BA|U|371
5NG8|1|BA|A|372
5NG8|1|BA|A|373
5NG8|1|BA|U|374
5NG8|1|BA|A|375
5NG8|1|BA|A|376
5NG8|1|BA|U|377
5NG8|1|BA|C|378

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BS

50S ribosomal protein L24